Scaffold Ga0310686

Basic Information
Taxon OID	3300031708 Open in IMG/M
Scaffold ID	Ga0310686_101139269 Open in IMG/M
Source Dataset Name	FICUS49499 Metagenome Czech Republic combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031708 Open in IMG/M

Scaffold ID

Ga0310686_101139269 Open in IMG/M

Source Dataset Name

FICUS49499 Metagenome Czech Republic combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8243
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8243

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.043

Long. (^o)

13.6183

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F021893	Metagenome	217	Y
F026930	Metagenome / Metatranscriptome	196	Y
F040993	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1011392691	F026930	GAGG	VTFLQDPEFGDRIITLMAALVLVLQIAAVGQRWLVSSIRIFAVQSFLLAAIAGI
Ga0310686_10113926910	F019704	GGAGG	MRRGVKVRELMQKEGLSGEVVTLFHSGRTGIIHGDDGYDVTFNEESLVVGLSYGELSLGLRVSYGIFFATGAKLPTAINLQPAIGGPTATPADAENVLSARPGGTGVV
Ga0310686_10113926913	F014771	AGGAG	MRAKGSITQLIRKPRPGYILGEDGCLVVFDESALAGLDPRELAIGDWVEYEESDLMEGRRASRIKPLIQRAEE
Ga0310686_1011392697	F021893	GGAG	MPDYYTSQQLAQTLGIAEATIAELQVKGLLQPTVKDGRSFFSSRQAHCLRAAIRWARKDKIELQEALACVEERWLAHTSAPKD
Ga0310686_1011392698	F040993	AGGA	MGTGSAVKRRLPVWRVRGADHLRSVKDGGESYRTKLFRTGRGLACALVLLLMLRFLGQGLLLGVAGAALILLLQELVDPTPLFWSAPWEALRLVFSRRHRANHLWLHRTQYLARESIGRSIKSDGFAMADGFIVIGVGRSKQLVQWTADSACRGMGQEREGTSPRQGCKAVRFLIAVWLMTGSLLAISIWRGIDLPGALLIALLSAAAGHALARPVEKMMANWFAIPAWQHEDARGLRLEVEPIEFPEWLWWQGSQGFIVRRIREEEPRED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310686_101139269

Overview

Ecosystem & Geography

Associated Families

Sequences