NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10576914

Scaffold Ga0315291_10576914


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10576914 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004234Metagenome / Metatranscriptome447Y
F009004Metagenome / Metatranscriptome324Y
F015420Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_105769141F009004N/AMKTFNQILDYLEVQQQEDKLNTNQLHLIIQTLTTFLNKEQLEEIENLFNQFKK
Ga0315291_105769142F015420N/AMKKLIKYFTPVGEEQIAIAKAFVIVVSATLSILFLFTFLELIL
Ga0315291_105769143F004234N/AMNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYNATETDDEYMSLFPLSDANLNLLKSKL

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