Scaffold Ga0315291_10564624

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10564624
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1040
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046179	Metagenome	151	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_105646241	F046179	AGGGGG	MPQWESKALALITGAGVSVDDAPWVLECIQKAADDIAEHDDDLQFPLFMEYYANDKAALCSLDAETFANVLSCLGIDLHRLETLWERKHLDPPTDEVDWSLE
Ga0315291_105646242	F072111	GAG	LDKPQVGKGGGMKKQMILALAIFGHLFLFLFVDSLFEAPTMWKMWAFYGSSLLSVAVWGAYVIKDDTDGGGTA