Scaffold Ga0315291_10504503

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10504503
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1121
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F011753	Metagenome / Metatranscriptome	287	Y
F033721	Metagenome / Metatranscriptome	176	Y
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_105045031	F011753	N/A	CDAYVKLKGIGDAIVDLKNRKVNPKYEPFYDTDCAQIFAYLSASENPKAAGVSIVLASNDSSKIMTKVWDKDELYQAGIAFCAMQKVWAWVKGYTPPGMKL
Ga0315291_105045033	F002009	AGGA	MTAPTIAEMGDAAADIVWRVMGRGSEKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETATDHLERALVRCLFTLAQIKKEVTRL
Ga0315291_105045034	F033721	AGGAGG	MRWIKKEFDDEGKPEWAVYNDEAGEGRQEDWSHYDTFETRDEAIKGCGSVTWEDYDCSDK
Ga0315291_105045035	F058800	N/A	MKLALSLILYWLGDVISRTILRLGIGYGLYKTLMLWSLELDDKFDVWKE