Scaffold Ga0315291_10488660

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10488660
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1146
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029678	Metagenome	187	Y
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F090097	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_104886601	F041090	AGAAGG	VRKQTTSVSQGNIVKLSDIRRQKHIASSPFGPVRAGSTTLQGTSRDHQLTELLNSLENAVADLNSKSYTVLDTLIIAIQGARVALCDTTTEEVGTDV
Ga0315291_104886602	F090097	GAGG	MTIRSKRVSGKQAIHYRNYRRARDRALTRLSQAYPETYKELLELEKVNDEANGAKWVGIDDSSSLTVGFSAGGSGRERSSDPADIAEGEGERE
Ga0315291_104886604	F040536	GGAGG	MDKLGKVIAFHPVKSGLKLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEIYQLLKGVN
Ga0315291_104886605	F029678	AGGAG	MSKVTGFTIFNKETGQKLATLPLTIPIGATVKAYERDGHSVSWGWEESNG