Scaffold Ga0315291_10435864

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10435864
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1235
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F009328	Metagenome / Metatranscriptome	319	Y
F059768	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_104358642	F059768	AGGAG	MTFQEWVKALPKAERAKFFRQIMAVVDAGRLAGVPPEELAKSFADTYKEVEKL
Ga0315291_104358643	F002420	AGGAGG	MNFRETTVKYIKDILRAKTIAEVIHAELQEAHLRKLEAETAAEYADATIEYNSRRIERLKQRLFEHAEEVI
Ga0315291_104358644	F009328	N/A	MIEVWKQGYHCVICGRFLLADEYGVILHDDIEHPPEMNFDDEENPQ