NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10425771

Scaffold Ga0315291_10425771


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10425771 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1254
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F009734Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_104257711F009734N/ANDTILVYNTILSAFEGTWTPKVMQFALTNFQSEGLRLMMKLTTGQINKYSGYKTPAQTTSADYVDFGIQSNGTSVGTFDFSSSVRTRDMDFGDPYAAKHGSNFEIIFDDSFSSNATIAIQRDSDVGDVEVQPNLNIASTVLVLPFVLPAVLPTSVKKRIASDLRKYEKWRLINISVTSEANKMAVRQITAAANPDTIEVQKTI
Ga0315291_104257712F002149GAGGMTAVEYIEESGVPESMWPNLAEWYGWFEKQGMVGVVKDGDEIAGVALARCVKDGQKADHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
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