Scaffold Ga0315291_10282966

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10282966
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F035631	Metagenome / Metatranscriptome	171	N
F070026	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_102829661	F070026	GGA	MKQIYIEKLAEVPGGLPAIKMEKHIAGESQGDNYSIPVEYNLEGSLIYDIEVGKN
Ga0315291_102829662	F035631	N/A	MLRVYSFETMNIEKTFKLTIKATSFYLNATEINALYNECGKALNIGNTNPSYPPGVTKQPSDYPSWPTGYWPTGYAFGTTTDYPSQYCHSDMTTDNFEFDSNTSLNPKSSKGINFIKDDMTTIKDDMTTIKENNNWRSSVQKALDKLSVKNDITTSEGIKVG
Ga0315291_102829663	F005293	AGG	MVNDSVPFTPSRDDLIGYISDTHKEINGFRPRPNWSELSYEQLDKWGRSLAAEAVTYRKQEVIRNRIARGLRRAQQRAWVEKKRGYFTSGSFTVGDVVKF