Scaffold Ga0315291_10205278

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10205278
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2005
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054803	Metagenome	139	Y
F073237	Metagenome	120	Y
F090290	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_102052782	F054803	GGAG	MATNKEYEEWKKDPVLQQEYAKYLLEEAQKTDPKSIDFINQFTSKFNKIFKEKS
Ga0315291_102052783	F073237	GAGG	MNLQDEIWFDTSKGRIGILMVLDWHTEKLHYIMGVATGMNENVDINHIYSGGVHLPDYVGAALFFGDWE
Ga0315291_102052787	F090290	AGGAG	MDKPLPYTTKSGLQIGCNYTPPQRNYMSADAELLQSALLGIEPEFSQRRIAGWVAYVLFLIALYTALVVWEL