Scaffold Ga0315291_10196523

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10196523
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2060
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005452	Metagenome / Metatranscriptome	400	N
F022370	Metagenome / Metatranscriptome	214	Y
F039982	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_101965231	F039982	N/A	DRITPYVFTSATAEADSTYTIPQIPAGLACIDGATAGDLYAGVAPIQSAILVVAVEVFQSVTAPGNQIMSDQFQPSPFILGRSLSNRIIGLLGPFLEVETMCL
Ga0315291_101965232	F005452	AGTAG	MTIEADIRTPLQTALTSIAANVYNGIPEAMTSPSIVLVPDSPYLESTLINGSTTKVKINFLVTGVVGYSSNAAALTNLEDLMISIISTMPSGYTVGDVSTPTPLEVGASKFLTADLQVSTYYTD
Ga0315291_101965236	F022370	AGGAG	MAGQSRTLKLSILADVDQLNKSLKAANNDVENSSSK