Scaffold Ga0315291_10162460

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10162460
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2321
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086835	Metagenome / Metatranscriptome	110	Y
F093779	Metagenome / Metatranscriptome	106	Y
F102562	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_101624601	F086835	N/A	LMTEVDISTVLIDGDTATIMGVKYQRIIEPESFYDKLYGLLKPNLDERVDFHDMTIRVLDLIRENIPEYKKGVGLPEYSVGYNDGIREVNENLFK
Ga0315291_101624603	F093779	AGTAGG	MKIEITQDISGTGDYRWSLETGPERIDSYTGYCYTLGECFEKIVMWNTYNAQKYYGGTEN
Ga0315291_101624608	F102562	N/A	MTDEEFLKQTATKAAYALHMPLGDIEPLKMLEMFSYLHILMGGDDELMIHWISSHNNHLKFCPGAYLTSEYHMNKILGYLEGMVEH