Scaffold Ga0315291_10134549

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10134549
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053077	Metagenome / Metatranscriptome	141	Y
F053753	Metagenome / Metatranscriptome	140	Y
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_101345493	F053753	N/A	MNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKYPEICMWQTRNGYRIEGSFNTKQNNVYVYDKFEDFKLSLALNLNDYKINKLIDANQALLNQANLELSVADLDLPF
Ga0315291_101345495	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPENKPDYVFNIDYYNKWTNFNEGLLNKIRDYRKYN
Ga0315291_101345496	F053077	N/A	MLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMINPFSESAVNINTKEKYYDFDYVSLDDDEVQNYKSDDTPFDDIIDLSGPLDN