Scaffold Ga0315291_10083241

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10083241
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3494
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015337	Metagenome / Metatranscriptome	255	Y
F021980	Metagenome / Metatranscriptome	216	Y
F024553	Metagenome / Metatranscriptome	205	Y
F070154	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_100832411	F024553	N/A	MATLKKEIQDVIDNTSDVLYREEIYINDRHEYDYHKLEATKEATVHTLYYSDDFEWADHIRKTVAMQLVDTGGGIEIIGFNSKEEIDYLEAEQLHILLRLSSSHSVYKIAEPSPK
Ga0315291_1008324110	F015337	N/A	MKTITMKPTEFYHFRKLAFAMSLAFGCTIAHGVYIVEASIDQLEKLGY
Ga0315291_100832414	F070154	N/A	MNIKYSTRVVIILKNIVIKIPISRRGYLQGLNEKKIWDKYNNTNSLAELKWMFMGVVCQKRYTTVSLIPTRVIYYAKEVMPEFDFDNCDLYRASNWGIGDDKYILLDYGVNEYIASLYKN
Ga0315291_100832418	F021980	N/A	MNKFECSECGTRYSSPETTPPPGIKWSDGHVCTPKPINK