Scaffold Ga0315291_10082147

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10082147
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3522
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033352	Metagenome / Metatranscriptome	177	N
F042872	Metagenome	157	Y
F043823	Metagenome	155	N
F048834	Metagenome	147	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_100821471	F033352	AGGAGG	VSEFRLIDNIEVMACRNSAERVVKALNRGEIEQAKDLARKHEIAWHVTDREFQTLNHPHRTNDFCDDE
Ga0315291_100821474	F072095	AGGAG	VTRDLEKEGVLPATASQSYGSAQLSQTTALIDLQTKHRDLRNRLERIEDILKGLIEKQGASL
Ga0315291_100821476	F042872	AGG	VGSNPTPSEVYGYNDLRRDGNTAVITEPKKKHYQQHSLLIRGGYPAEPAYHPNPSVARMWSAQR
Ga0315291_100821478	F043823	N/A	MKKAKTNLTIDPKVKRSGERLAKKGGLSLSAYITTLLVKELEKQKRH
Ga0315291_100821479	F048834	GGAGG	VAIPGVDWAAALDAYVAGDREEVVPPGWFTKIAIAKQWGKSPVYTNKVLTRMIKSGGAERKVFSIRIKICNRGGKIGYCRRVPHYRLTVVKTGKT