NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10069095

Scaffold Ga0315291_10069095


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10069095 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3901
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056374Metagenome / Metatranscriptome137N
F059905Metagenome133N
F078628Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_100690953F056374N/AMKARKTIEIEVIKDRVNRFLANSRNEDSQVRKGHHGLATMLMMEAGAYKGFHYLRKEDVAPGITFGVEWVDGKPVFHDETRTYFI
Ga0315291_100690955F078628N/AMTKVIEYYSKEVYGNSLEYVVNKDDAYIISRLTGKKTISGTERELIRDLTGSFIQFKEVLAPKK
Ga0315291_100690958F059905N/AMKNDCKNAIRYLTTKTYEKFAKYKEDTSVLSLPGESWEFENHILNHQDYRNCIQQNPLDLQLVCFEKSFRTYSVNNLLDRNKDNNTKYINDKLTQDSLKLLKSKNKFLWFDFCGNPSVDSLKLLNSSFVKGEKTCAIFTFTLLWRRRDNLPVEIDFLSKSSSNEEAVEIYFKQAIKDLNAHIEGYSNKIHLLWKYSYVSSRAPMICLCVTNDPALKEERSLRGQGELYKPDQEITPAAEIKGDLDLGEEMVQKMKISKRSLAAHKAWVTIRANKARAVLSVA
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