Scaffold Ga0315291_10044473

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10044473
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5060
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011473	Metagenome	290	Y
F016922	Metagenome	243	Y
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1004447311	F057879	GGA	MSAEPSSEETNPRDAVRPVPVPEGGEQEPSSPFSDASQVPPWEL
Ga0315291_100444735	F011473	N/A	MNWKKYITDPRTGLPQRGAISRIAELLSTHYGTVKRLFLDVCKPTADEANGLRAIVQSRTVLAAKKRSDAGQPRGKYRQRAAVKSGVAAPQLKALRSAKNTARKLN
Ga0315291_100444737	F016922	N/A	MSAIRINSRAISVEADKYGATDYAIRSNGRDFIVTAHSKAEAEHAAEYYRPDEPDAAQPELLP