Scaffold Ga0315291_10034325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315291_10034325

Scaffold Ga0315291_10034325

Overview

Basic Information
Taxon OID	3300031707 Open in IMG/M
Scaffold ID	Ga0315291_10034325 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5882
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5895	Long. (^o)	-110.359	Alt. (m)		Depth (m)	92
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056323	Metagenome	137	Y
F098930	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_100343251	F098930	N/A	MNESLEKQPSNRKLNQKRKFGFGSGRKRNQLQDKKINIRVSLSVETFKRVDSLAKRIDCSLSSAVERLIRTQESEGIEPTQEVNWDEYKAKR
Ga0315291_1003432515	F056323	N/A	LHEIAEDLKLPPAVVALWAADGMIPHIMRDGMPLFDPVAVGKHIAKQLNELNKIDDGNTTDTTTN

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