NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10033354

Scaffold Ga0315291_10033354


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10033354 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5978
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047677Metagenome / Metatranscriptome149N
F066778Metagenome / Metatranscriptome126Y
F070109Metagenome / Metatranscriptome123Y
F077297Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_1003335413F066778N/AMSYTREPNWAKLKPEIDWDEQEEKLADKLNKYINKNNTVMNQGIVKSQKFVRTWDGPSGAIHYFDLVVESNNGLNEVGQIGVKDMNSPKIQVGATLHYTVEERTGPTGKKSTNFKMQNPMQYAGTTAAPSSAANSSSNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVEIKTVTNE
Ga0315291_100333546F047677N/AMKWLKSVFSNEGDASSKRVASIIALLVCINLSYIGTFTDYKCPEYMYDGLLILAGSGLGLTVIESIFDKKKSNDKSNEGTN
Ga0315291_100333547F077297N/AMTNQTKEQIKAGVVIVVALSICITIQCLYIALKDSKKALEGYERRADRATHVIDSLEATNVQRMQEIAQLNMQIQHNTKRYEANISAIDSLDRNGLRRAMHNLLTSLAGERYPGESND
Ga0315291_100333548F070109GAGVSLTTNEVRSLLKLKAERDYLKVQVGLLSKSDSIASFVIKDQQKSIDAYTIANEQKAQQLVKVQQELYKEAARKESWRSAALIGIPISFVGGIIFNLLF
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