Scaffold Ga0315291_10019823

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10019823
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8042
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F019290	Metagenome	230	Y
F025225	Metagenome	202	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1001982311	F090073	AGG	MSDILEEELSASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSIYFIWSFLYLHLLLHKNKREAIKLAWDKDTFRERVLDWVVDKTEEDREIATNIVSKIIEEAGKARVSVVQSGLEGQASGNE
Ga0315291_1001982312	F019290	N/A	MQGTSYWGTTNIKIASCVAAFGGTLRQSDPVTHIVKEDGSRQVTFWFNSGEGAEAKAEMERNWGDMKSDSESPVRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPINAKPELKRAILKAI
Ga0315291_100198233	F012113	N/A	MNQLLSFVQSQDVFAWLGALTALLTAAIAICALIPGEEPEATLQKILDFISKYLSRK
Ga0315291_100198239	F025225	N/A	MADVINSKLGDVAVTAIGTTYSTTAAQIASELQRVEGNIVTKKVFKPFGLTKTGKIKKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKEGVGGLGMGGGKPGTIGALARRLVAGRKRSVNYIRNGWAAAADVFGKRGNLTRGDYSKEAIKRLGGGTKADSQKAQIEGIIFNRAGSLDTKYYPVRKRAISGAAKVGMPGLIMAIDKVMKDMNVFLARKNKDESDKLGL