Scaffold Ga0315291_10010124

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10010124
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11547
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032950	Metagenome	178	Y
F035217	Metagenome	172	Y
F042869	Metagenome	157	Y
F052471	Metagenome	142	Y
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1001012412	F052471	GAG	MIRKIRTFYGKRNGQRGNKVTTVDHGVAWLCEKCGEVILYKHLTPKHFCRRLIKPVILEDTESYPQP
Ga0315291_1001012417	F035217	GAG	MTDDEFNDKERQSLWRKRAVQAAISTNPYRNQVIEEVAIEVEKLTGFGKDTIDSLTIYIRNLKA
Ga0315291_1001012418	F042869	AGGAG	MTELIGIDDTLKNNVPIGSIELKLAVAKAEGYAIREEKTRYHHVVDGVVVTSVDESKQTYYFFNNQPLPALDPYHIAMEFYLKEKL
Ga0315291_1001012419	F095169	AGAAGG	MNWRELTIKYVKDLLRARTPLEVAEKELIEAQHCKMQAETSVEYSQALVNYNEQRIFRLYKRINELKEYGYD
Ga0315291_1001012420	F032950	GGCGG	MNTLIKFVIAVACAVSLMYFDSLDNKPKERANVGNNHLGSRNGDFRVRIGGLRLHRVCFVPTKQGSRRVVKCPDCEWTRTLDNRYMCKKIERVILATQIKRRGKHELARTHHQVR