Scaffold Ga0315291_10007726

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10007726
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13250
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F039113	Metagenome	164	Y
F041166	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_100077261	F041166	N/A	DRSGVRSAAFGIYVYAPNQAAPSTSAPMMVGKFQVGLSGSTEGIILRVELPATNAPTPQVGDTNLARPIEVGKSEGLYLEKGYILCVGYLGNGPAAVSGGLSPSGISIMAQGGFY
Ga0315291_1000772614	F039113	GGAG	MDTHIKDIKDISNALASIDVSLQLLVASKNDKRTTAFVSKKIICQRLSIPAVTLDKLIHQGLVSNGNYGLAEGKHFCKLDPEERNSSKFLYDPHAIIQSAWENFKNV
Ga0315291_100077262	F015724	AGGCGG	VARKKGSDDFSWGSHQPKKSSFSFKKVEGGSSTHQLSTPMPWRRKFRPDFNLKDFSILFDYNYASLWTRWRRGYELSMYANQAYVGLNYSFRYYTSGVAGTGAALPGICYMYPSTEQDMAMRMVAIRPRDSFNFLDFGYAISSVSLYKPDIYAVQLSSNFGAPISFFTGEVLSDRFNANGTEKTTYNNYTVIGVGAGLNPLTPTFAPIFNTLFISTSPASSWSVIDGTTLASPARSLPTPGDYFTTEMRFGCNCPDYLAREDFNLYKYNLKRKYPYTLPQDMKPGIYDAGTNYEIDRTSPSRDFPGFARDFGFLYVKKVLDLPQYTDSARNYSDPNMFYYAPRWCKHIYASFWSMQQILTKDQPTLTSPWLAQPTDEPLDPKYREQFDLNLVKTTDFYKRQRNLRWWEKYSPSIDTVPIHMMYADMHPTMVKTLNFDTLVSGTTTPMVASGFEMFTLDQFNPFLPPDPTTLQKYDGGTYFNGALVSGGSLTLDGGRYANGVLIPYPSYPSALNGGTY
Ga0315291_100077265	F008401	N/A	MESAKLLTIAQTAELLNCSAGFVRKRIALTESSQSGGWPKGIFVNLQPNGHKSLYRINQDALQDYLKGETE
Ga0315291_100077268	F023840	N/A	VNHEASANLNVGLTLEDDFTLTRLKNAAHALKGDARDQYLWKIIYRFVCRERAYKSVMDEVGVIVDTNISIFSDEVD