NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10004870

Scaffold Ga0315291_10004870


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10004870 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16953
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F012010Metagenome / Metatranscriptome284Y
F023555Metagenome / Metatranscriptome209Y
F069688Metagenome / Metatranscriptome123Y
F083779Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_1000487011F003038N/AMGLSTEDLGTGGTGLPKTISPGNRVLKINYVELEEFKFIADSYHLMLHMESEPIEGFEGFMLDKNDETKGHYAGQIGRVKASQYAYADGETKTGIKIQRDKSILIFLQNLCKSLGINDWMVQQHNKHATIQDFVEAFNATAPIKDKYLEFCIAGKEYMGKTGYTNYDMWLPKSEKGKYAFGEIEENKVLQYDESKHLKKLEVTNVKTFGDDEILSKKTTSNDFSLD
Ga0315291_1000487017F069688AGAAGMKKVNNIFTVDTVTIDGSYIKLTGVYQIPESSPFERGDILTEDKYNGHQIYVAFATKDKNGKDGLILDTRSMHPAIKKSLDTVTLGLNLFKIED
Ga0315291_1000487019F083779N/AMAKMIFDKEETKSLMMMLKSKDADNHIMAFETLKNVDFKKYVGELLVLYKFGGHTMENWMTNCKKIATKLLDIKPETPLSSPKTLSLITKNKGSKASVELFMEFFIRDMTRMLESIGYPTDQFEIHIKLKDDGQTAKS
Ga0315291_100048703F012010N/AMQEIFNKLIKEDLSPNTYYVLHCIKEKIVPNNFVNPGIESKRLQNKEWLNEDLQLTNKSIIFIEEINSFFKKSKNTTSKNLMGDEFLIKIQEYVEIFPNKKLSSGKYARVNIKSLEGPFRWFFETYNYSWETILVATEKYVTEYSLKNYEFMRTAQYFIRKQESDKNFISDLATYCEFISTGGDAETFYFKENIV
Ga0315291_100048706F023555N/AMNNFRKDREREFFTHHMPTFQNIGLTDPFFTIKTAFFQKGKYGRYVQFFEWELKKAQDIYVEFYDNLSDSNGKTINVIPMYKDRPLFKFKNNPFYSEEYEQKENLNDKGETYMTYIIPVNECVMVLNSGQEINYALYEKRKEEAELEVPQLQTSLSIFPDFEQDYGKKENVVTSEEDAPLSEITIKDLAAIMLMKPVSNRLWLNELIKQTKSEL
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