Scaffold Ga0307997_10006193

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307997_10006193

Scaffold Ga0307997_10006193

Overview

Basic Information
Taxon OID	3300031706 Open in IMG/M
Scaffold ID	Ga0307997_10006193 Open in IMG/M
Source Dataset Name	Marine microbial communities from David Island wharf, Antarctic Ocean - #36
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5506
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5781	Long. (^o)	77.9617	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063089	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307997_100061938	F063089	GGAGG	MTLRLQLYLFVGLAFVAGLFRWRSAYADAKLAEIDKQIASDRLDAALRKMEIEHDVETLGDVGLGERAAKWLRPSADKR

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