Scaffold Ga0307997_10001402

Overview

Basic Information

• Taxon OID: 3300031706
• Scaffold ID: Ga0307997_10001402
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11343
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307997_100014026	F080057	AGGA	MLNNEWKSIVIDGKKLEEFSAISSMGTYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSINLFHELACELKDRTDIVLDDIVIGPTDFYGAENLEEIINNPRLADAILMMPEDNRNVQHNCSILGSLSEEDIDSKIKAIENSPLGKAVEAWDVQIALDLNRLMTDIIYMEALDRRVETFKNSSLNFEISMATNIVQGVEEILFAAIDFVRTKYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLSVDQNRFKNKFHFLQGDVSHKAFHYSVVSVYQGDMYMSPFIYENAQIHIDDFKVLVNGSLVDSILNKKNEVVNSQIEKSSDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVISLYDDEVYSGNSY