NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307943_1197935

Scaffold Ga0307943_1197935


Overview

Basic Information
Taxon OID3300031704 Open in IMG/M
Scaffold IDGa0307943_1197935 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005660Metagenome393Y
F009455Metagenome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0307943_11979351F005660N/AHTLRELKQLTGVPINIMKEVEKRGKGAYTTNLGSVRLNDFSKNDDLRKGASKRLSMEQWSKARIYAFLFKSLFQNMRYKKHDMDLFEELKTKKII
Ga0307943_11979352F009455N/AMYMEQIQIHITPAQLSKIKKGLPIQLKHGSMGSGDMVIAVHPDKARKMASAFKRGKGLRIQMDEDEVRASGLLDGIKRL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.