NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307943_1077385

Scaffold Ga0307943_1077385


Overview

Basic Information
Taxon OID3300031704 Open in IMG/M
Scaffold IDGa0307943_1077385 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002402Metagenome563Y
F079423Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0307943_10773851F079423N/AFGVRQLATGETSTTGEKFMAVYANVDSDFTVASTSGGDASFTVTLLAGGSLVGPYKNITGLTGDILCFKSDELXVLDLDLDYNIAG
Ga0307943_10773853F002402N/AMYYKGTKEECEDYDTKVTLGENYQGSTTSWANLTSNQNGEGFAILKHKNYESEMTLIDKIPDSWYNN

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