NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307943_1051125

Scaffold Ga0307943_1051125


Overview

Basic Information
Taxon OID3300031704 Open in IMG/M
Scaffold IDGa0307943_1051125 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1695
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F011634Metagenome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0307943_10511251F011634N/AMIFKDISKTGSLGSCIVSKDIGSNERMTMQNLQIPETAESRIVPKWLFPPRFPDKDRFTSSRPDFVLVTPIAAKTQKQQTNVGGWVFRS
Ga0307943_10511252F000607AGGMDKFSSKVHRVHMELEGKLLNSLRIKTQFLERLQSVSVVDGATHTQKDDVESNGGSLENVAEIFVLFLCGVQLVLRSGVLTVLDLDEVDVTPSFVEVFRSVLYVVGGSTGGWL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.