Scaffold Ga0307998_1004908

Overview

Basic Information

• Taxon OID: 3300031702
• Scaffold ID: Ga0307998_1004908
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6390
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F010570	Metagenome / Metatranscriptome	302	Y
F016593	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307998_10049082	F010570	N/A	MKTFRKYSFGSKGAATTKLNALGTITDAEGNEMPSHPHAIVHLGNLVEVAGTYDEEGNELTAPVMSSSYHIDVLWEGEAVASWDNAMVWCAPMGLHTFGSSSAIAEWTEACKALHPEYFPEPSEDLI
Ga0307998_10049085	F016593	N/A	MKRLKTGVVNTLSFVKLNSFTVNSFDVTLEKVVGVGSLTITNLTDINNLDICKDFIVINIDLILNNIEGGEYILSITNSGETYSYLTEVQDYTVTQDGTGIYSDSVRFTDL
Ga0307998_10049087	F005132	AGAAG	MVDIIFIDDNYLYQNFPLPKRMERSALLALIQLEQFTSIQDLMGTCLYDHIETKVAAQTLTTDEQALFKLIKYSLAMYSAKAAVSILRTATAITKAEEQKQDQYILDTISTTIDSKIGYINKRVTNYILNNATIKAIAIADGCDNDLFNEEDTYQGSVFYPQDGITVTYCEDGSISYNP