Scaffold Ga0302120_10080084

Overview

Basic Information

• Taxon OID: 3300031701
• Scaffold ID: Ga0302120_10080084
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1348
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 625

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F002744	Metagenome / Metatranscriptome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302120_100800841	F002744	N/A	AYPINTPLAGGEHLNFYAEPLTSNVVAAGVGATVLYDTESTNGVEQYYTRPTNENASSTTINTRTQGGDMTIQGGSEITGLYCVVSGATATASEHDVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAVTGGGGLMQYNMPRGKGIPLASNVTITNYYTNRDARAGGASNFINFVRYSKN
Ga0302120_100800842	F000704	AGG	VAKLPHARSEIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPIDTYPRVFSDTDSGLLLNEGNDTAFSQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNDRLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDILIELNTVITGTNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSMLGQ