NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302120_10006699

Scaffold Ga0302120_10006699


Overview

Basic Information
Taxon OID3300031701 Open in IMG/M
Scaffold IDGa0302120_10006699 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5136
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)625
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058462Metagenome / Metatranscriptome135Y
F068147Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0302120_100066992F058462AGGMKVDRPFQVKSTHIEDFPLRVSYIYDNIPLENSEDIILEHLIDTESEIEQYEIGVALTQTYQYTKLHNDPIILAKWQGMRTKSGPEFRIGLGEGIQGSKNTPPIMTGNFKDGVIINSTLSIESVKLGCRQGKFCIHVDGKWHAIQIGDEVVQDT
Ga0302120_100066995F068147AGGMKKGEKDWDYQFVSDCEIVNVFIPKNTHLSGHEELKQKLQMLQQVECDNHLVSSIVNVYNTTSIDWIEHVRKMGHKYVAFWFDGCWPKTDGLEKKILNYIKRLEKKDWITAVHPKFLDSLMLLNIDEFIAWPAKAPNFQNYEFWAENWIGDCTVELSLTIQRNIVVGAPQTDPQNFLNGLMGKKYTDHTIARGARVIIKRKNIPSSPVYFVNTEPSSPKVAEHIKNTVFKQYVGATAWFKLLYYAYTYGLDIDSTKFVWYDFDPHSVKFKRYMVENWDGNDYPAFVKQWCEDNPDANAQLLRFVGKQWLNIVKQFDGMDNWLDFWIQVKLCKHEFLEVDLVKNHSKITDLLNNDSSTFFWASNIYSYVLLKVMSEPFTLERSFANLIIRLQQINNCWFSGTDPNDNDLTCDVKCILGYSTNDSIGTGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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