NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307929_1143812

Scaffold Ga0307929_1143812


Overview

Basic Information
Taxon OID3300031697 Open in IMG/M
Scaffold IDGa0307929_1143812 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031722Metagenome181N
F042665Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0307929_11438121F031722N/AQKVTKPMFYPEQAAAEKLGLNKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEFPTRFSPILWDADFVDTLASALHTQRIAMGDLKP
Ga0307929_11438122F042665GGAGMTPPKLSFATLMLLSSVVTVVVTLGVIPLLALTGSVSGSGLFFAPAAGMAAGYSTARWLGGYIEDKKNN

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