NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307929_1076347

Scaffold Ga0307929_1076347


Overview

Basic Information
Taxon OID3300031697 Open in IMG/M
Scaffold IDGa0307929_1076347 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031722Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0307929_10763472F031722AGGAGMHIDETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTRFSPILWDADFVDTLASALHTQRIAMGDLKR

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