NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308016_10038003

Scaffold Ga0308016_10038003


Overview

Basic Information
Taxon OID3300031695 Open in IMG/M
Scaffold IDGa0308016_10038003 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #233
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2078
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076591Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308016_100380037F076591GGAGGMRKNQKVKIRGDHKRAAQNQQKPRIGQVRVSARPMPHSMYRHAWLPDGSQVAIARSDDRYICGHFDASERPLCGPVIFDGGDSE

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