Scaffold Ga0302139_10223742

Overview

Basic Information

• Taxon OID: 3300031693
• Scaffold ID: Ga0302139_10223742
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CBN3_33.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 799
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 139

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F010477	Metagenome / Metatranscriptome	303	Y
F026028	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302139_102237421	F007055	N/A	MLKIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGAGESKMFSLYGTQVLDHQGNKPDKDYMKKNRPAHREYPTRMYKNHGGLLVWLTCDIKGRNEGL
Ga0302139_102237423	F026028	AGGA	MLRENGMSVCSNCYHRIKHKKAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKTEEDLGLPTALTDKQFGVE
Ga0302139_102237424	F010477	N/A	MIIQLQIRYLVFIPYLIFVGMLDGNILAESIVIGLALAIYD