Basic Information | |
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Taxon OID | 3300031688 Open in IMG/M |
Scaffold ID | Ga0308011_10009489 Open in IMG/M |
Source Dataset Name | Marine microbial communities from water near the shore, Antarctic Ocean - #177 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3508 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Ocean | |||||||
Coordinates | Lat. (o) | -68.5596 | Long. (o) | 77.8957 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004843 | Metagenome | 421 | Y |
F012279 | Metagenome / Metatranscriptome | 282 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308011_100094893 | F012279 | N/A | MRETNPNERVNMNTEIETRLNELKDTVKTLASAETFIEHMRDRKWDLVSELKKLGHDFTATTEGMDVVLSAPPSMRF |
Ga0308011_100094897 | F004843 | AGCAGG | MIIIAISLLMTILTGCARDATAEDSTEVTPAQQSLERTTLAETTVQWVAIVMTWNPVVYTIDKEFANEVNCWNYYDTGAGETKMLNSYGTQILDHQGNKPGKEYHKKHRPAHREYPTRMYKNFGGWMMWLTCDTK |
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