Scaffold Ga0308008_1039112

Overview

Basic Information

• Taxon OID: 3300031687
• Scaffold ID: Ga0308008_1039112
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1154
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F010942	Metagenome / Metatranscriptome	297	Y
F101352	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308008_10391121	F101352	N/A	SYNDCKFGKKKHERWSKYVDMNSESGKRIHGYAKKNPNKSIIVQHDKTGHMLYLKKYDMGGES
Ga0308008_10391124	F007004	GGAG	MKNLLIGFCLVLFIGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREAK
Ga0308008_10391125	F010942	GAGG	MPDQSRESEKQIITVQKDIEHLKYVISELEKECSFVKDHFSTKNNERLEDIKTIHERIDTHHETDLDFHEQVRKKISCRFDILDERIRHLDRWKWA