Scaffold Ga0307946_1058984

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307946_1058984

Scaffold Ga0307946_1058984

Overview

Basic Information
Taxon OID	3300031684 Open in IMG/M
Scaffold ID	Ga0307946_1058984 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #230
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1383
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.4561	Long. (^o)	78.1899	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001325	Metagenome	721	Y
F080712	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307946_10589842	F080712	N/A	MAHSPPPKLWYLLPNHRGALQAHMHLLHKLGNAKPESNYHAYYQTLIKDGTANGATSNAYLTSSNVSFKTKCTIMKYRTGTLHN
Ga0307946_10589844	F001325	AGG	MDKFSSKVHRVRMELGGKLLNSLRIETQFLERLQSVIVVDGAAHTPKDDVESNGGSLENVAKVFVLFL

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