Scaffold Ga0318560_10018034

Overview

Basic Information

• Taxon OID: 3300031682
• Scaffold ID: Ga0318560_10018034
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3182
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008335	Metagenome / Metatranscriptome	335	Y
F024260	Metagenome / Metatranscriptome	206	Y
F039327	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318560_100180341	F024260	AGGGGG	VLRQQSESADNRSNTAGQNGAIVNQAVHPSSAGERDGAETPATKTTRRAKKHWLDYATAFLTLAAAGGAITAAVFTGWQATTADQGLRDSNRAYVHSTNFRFVHYGAKNENGRTQWSVSPLIENTGSTGTRGMLMNTIISSAGEPDFASLEKAGFSPALILPKSDMTGAVFSMDGRGLDLLRGGGLIAMGI
Ga0318560_100180343	F008335	AGG	MIVDLDSWEAGYGDGLLGRPSQRLPALDWFSYSSGYLQARARRAGTREDFRRRATRPSTQRAPRPHGGSSRLIII
Ga0318560_100180348	F039327	AGGAG	MLTGTKFALCAAIVLGTAATASAATKRQKTTAYRSGLRVQMSAPRPAPPVNPYSPAATGGGTPG