Scaffold Ga0318572_10063237

Overview

Basic Information

• Taxon OID: 3300031681
• Scaffold ID: Ga0318572_10063237
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus daqingensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004458	Metagenome / Metatranscriptome	437	Y
F080328	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318572_100632371	F004458	N/A	AYRLRGSAVIGRGWCTADDLVGGMERDKYDDRAIQVIGWDGDVAMSTGRVVLPPGLPTEEACGLVVEPRRRVVDVGRMCVARSHQSMEHAALIGLMCRLYLTMRECGFEVACGMMSAPARALMGLFGLRLEILGPERTHWNESRAPVRFGLMSATRLLAGAQGQLADPQAARTSAVFVPPKPNELDSA
Ga0318572_100632373	F080328	N/A	QVGTAVASYDMTLQDVLTVFAPGQGLPTLTGDMLQTATATLSGPLAGQKFGRPGAQLRFFATGLGTLTDATKPNSQLEIAGNWSIE