Scaffold Ga0318561_10003296

Overview

Basic Information

• Taxon OID: 3300031679
• Scaffold ID: Ga0318561_10003296
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6220
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002001	Metagenome / Metatranscriptome	606	Y
F010338	Metagenome / Metatranscriptome	305	Y
F046611	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318561_1000329612	F046611	GAG	MTMTSASPSLGADGVQFTPEVIEEIKDLVAQGISRDEIASRLGVSVGYLQVTCLRLGISLRRIILPNGSGRHTADVMIAHMREQKEVPQPTAPATPLAPITALPMSPGVIEVEFTTGARLRIRGPVDVPIVAAVMQALTDCGKR
Ga0318561_1000329615	F002001	GGA	VSRAYLSRKLTRPLPTNDVGTLRTVLDARAYMLLLSKERERSARWQRAAQLLLAKADVDAVSRQLELALLYDGKLDVSKVPAK
Ga0318561_100032969	F010338	N/A	VEHVAGVEDYQIALATFHAASQRWPGTPITLRQGARVIEDSRRLRVV