Scaffold Ga0302136_1089162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0302136_1089162

Scaffold Ga0302136_1089162

Overview

Basic Information
Taxon OID	3300031676 Open in IMG/M
Scaffold ID	Ga0302136_1089162 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1013
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	80.9595	Long. (^o)	-132.1842	Alt. (m)		Depth (m)	20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037417	Metagenome	168	Y
F101495	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302136_10891621	F101495	AGGA	MSLPVSIDTMKSTINRRGGVARGNRFGVYVSHPSKSVNSLLNFNPASILSNLISGDGVNIADFISDPRDMFLLCQSCTMPGKRILTTEKTSNHHNT
Ga0302136_10891623	F037417	N/A	ILGNEIIGFKMMVDDFKMKWLLLGIVALGAISYTMTAFGPQLMETFSG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.