NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302122_10312506

Scaffold Ga0302122_10312506


Overview

Basic Information
Taxon OID3300031675 Open in IMG/M
Scaffold IDGa0302122_10312506 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB21_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021205Metagenome220Y
F050664Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0302122_103125061F050664AGGAMMKHKKFIIIKAATSIISGISMVTLIVLGITYLGFTNAFVFNNAGIAVTNNPVNNGQIDFILEGSRKHECTLTGVYSDAYDNA
Ga0302122_103125062F021205N/AKIEDKIEQQVERWDLFARIIPTVFLVVCSILIFTGIVDFQQAFWAGLGLFAVTAVTWWFWTIYTIKHLVRTLHRASKNLAEVRREFRDVSKDLEDLRNNNDEA

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