NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302122_10245242

Scaffold Ga0302122_10245242


Overview

Basic Information
Taxon OID3300031675 Open in IMG/M
Scaffold IDGa0302122_10245242 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB21_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)654
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090996Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0302122_102452421F090996N/ATTVECQDLDRRVIDQHKVFDLPDAWHKITIPLPRTDIKDIKIGDESIKHCLNSGINTAIGYEIWLHGDPAEYFSRIAECIAHEDLLRFKNLKNKYLITESWNEQVEGDFIPSSVRQFFAKGEGPHWYHKEDFHNLPYVEYEGPEIDTSIDLDEDLTFVDKKFYGQGQCKSLKPQPVLPTIRLDQVKNQKLKNTMRQFGFTDILQMQYVELQPNSVLPI

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