NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302122_10146190

Scaffold Ga0302122_10146190


Overview

Basic Information
Taxon OID3300031675 Open in IMG/M
Scaffold IDGa0302122_10146190 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB21_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)939
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)83
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012814Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0302122_101461901F012814N/AERRLYVAFFCGGGICVLNSHVQYCFHHIPKTAGSSLQLRLSHREHVGQLPKGSTLIVYPLHDKMQFYRVSDDPGFDAHKPIKEAFLRTYNNPRSVGNASIVCGHYTTMHQQGKHYTWLRHPLKRDVSHFNYDSKFGNEESQDFATHLSLMNGNFLVLWLYRKYCSLAEETDIKEKYDVVRKTLQEKSVKVYDSDDFEDSWTEIADELKVEVEPRLNSNEGGKAYEKITNYSELSPEFKTWHRSYNHHDYLLYEEFCT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.