Scaffold Ga0302122_10000190

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302122_10000190

Scaffold Ga0302122_10000190

Overview

Basic Information
Taxon OID	3300031675 Open in IMG/M
Scaffold ID	Ga0302122_10000190 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34848
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (79.55%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	74.0136	Long. (^o)	-139.5971	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067759	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302122_100001908	F067759	AGGA	MKEPIPEQKIEQQSRQVYAESNNLEAHIIADMLRIESITTELREFKEDTKHRLNKIENWLVAIVGTSFTTLLALVVGLLVNFFGQ

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