NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10504796

Scaffold Ga0307377_10504796


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10504796 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021761Metagenome / Metatranscriptome217Y
F076034Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307377_105047961F076034AGGMREPIMVIAPKQTPVINRLHETMNQALAYASAIRDNAQDDGQPIPLELVASFQETYQCLVSTLAEAASV
Ga0307377_105047964F021761N/AGHFLIMVTNPWVNRITVLVVMFAIYAAGYAGGRDQAVQAYNNHPTCNTNLKP

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