Basic Information | |
---|---|
Taxon OID | 3300031673 Open in IMG/M |
Scaffold ID | Ga0307377_10370705 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1069 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Finland: Risofladan, Vaasa | |||||||
Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003976 | Metagenome / Metatranscriptome | 459 | Y |
F020816 | Metagenome / Metatranscriptome | 222 | N |
F046985 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307377_103707052 | F046985 | GGAGG | MSDLLELYNESWSEEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHSRGIHDDVRKVNVKAIDINTDFSVNMLLNNYEAMKMAEMLNEYPFERGYQQQADKIWYNILKHLNEFNPEDAEELRNKLFKRRVAXTEHYTKN |
Ga0307377_103707053 | F020816 | AGGAGG | MKVYEITVSTTIQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDEXFIRT |
Ga0307377_103707054 | F003976 | AGGAGG | MSRLYNDYYFEKEDVLHTLDKLEMSVRFLNVWVNKPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEVRXKYMR |
⦗Top⦘ |