NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10242919

Scaffold Ga0307377_10242919


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10242919 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033765Metagenome176N
F106097Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0307377_102429193F033765AGGTGGMKSLLRTILDECEKHKLMYRANACELWNHGCTDMIEPWGYDFDALAESFKEFEHDERLGNIQILPASEVQTHAELIKSIRQNAIEDCGCQEQELNIKAMTDEAIINDYPDEYYSGRYWIMWTNYGGNEHTDCFTDYTTGLDQYFDVSKLTNDWEDEYNKFKLGLI
Ga0307377_102429194F106097GGAMNRQQMIDILLEENVNGDWTDNYYFEKDNIHIVWCSSLELWLMLDYKTFPKTFESSPTLEEAFKYVFEDQLSTEGIKEFLDNREKTK
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