Scaffold Ga0307377_10107812

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10107812
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2249
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036720	Metagenome / Metatranscriptome	169	N
F060729	Metagenome	132	Y
F060933	Metagenome / Metatranscriptome	132	N
F068898	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_101078122	F068898	N/A	MIASKAEIKALAFSNTFDMNAVKDNLIQLVEWEQVLSLFGADFYDDVVANPGTYTTLIGTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPILWKGEPKDDQIINKIIIM
Ga0307377_101078123	F036720	N/A	MDSSYVQNYFTNGIESSFILAAFFFLLLAFVTSKWFQFTIRDKVSNRTPLKASFSFWWLDNYNSVVSFFLMCFPIIVFTEDLVHWLGLNFLPDAMKTENPMYIYYIFGLSFGWVLEVILKKAKLIRNAQI
Ga0307377_101078124	F060933	N/A	MDKVILSAILLINSLQTASFKNKIVDICLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIVTAIVILIASLFIRRWWSKRFK
Ga0307377_101078126	F060729	N/A	MKLTELKEKIYKLELDKYDGMHLGNGTILDAKRFVENHIRFLESNPNNSTFLLYYKRLFE