Scaffold Ga0307377_10093647

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10093647
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_100936472	F052566	GAGG	MTADYVYPRLDGGTTLCYGVVKEDSNFSVVCSDENMDGIWAGDIDFIPTDWKSVCQYLEQYYDTKIEQLETC
Ga0307377_100936473	F050370	AGGA	MYQHEVYIPCAVGRQTFEQAKTLLTNIHGGCTAYNGVGHWSDEGENTDGTKNYIQLREEVWVVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIAARFNYDS
Ga0307377_100936474	F002733	AGG	MMVESKTLWLQLTTTEANALMVMLDSEMESQFQYDSLDLREWETLDLEAYKILAFHKYKTWYTRNCNNVSA
Ga0307377_100936478	F091977	N/A	MTLTEKKIQRMVDNYQFMQTCFTCWCKESDKTPAEQMTQLYHFLRDQMQDVERIDRQDAIDNRNRLNSNGYTGKAGH